Bilde av Rakaee, Mehrdad
Bilde av Rakaee, Mehrdad
Førsteamanuensis II Institutt for medisinsk biologi mehrdad.rakaee@uit.no +4777625237 Tromsø Her finner du meg

Mehrdad Rakaee


Stillingsbeskrivelse

 

  • Medlem av Translasjonell kreftforskningsgruppe.
  • Veileder for phd- og postdoc-studenter.
  • Lang erfaring innen eksperimentell, statistisk, og beregnings analyse av kreft, med forskningsekspertise innen biomarkør utvikling, validering, klinisk implementering, klinikogenomikk, og kunstig intelligens-basert patologi.
  • Hovedstilling som forsker I ved Avdeling for Klinisk Patologi, Universitetssykehuset Nord-Norge, Tromsø, med ansvar for å implementere, analysere, og tolke neste generasjons sekvensering (NGS) i rutinepraksis. Tjener også som genetiker i nasjonal infrastruktur for presisjonsdiagnostikk innen kreftbehandling (InPred), IMPRESS-Norway, og TNM-I kliniske studier for persontilpasset medisin.
  • Bistilling som seniorforsker ved Åslaug Helland lab, Kreftgenetikk avdeling, Institutt for kreftforskning, Oslo universitetssykehus (OUS), med oppgaver som utvikling av kunstig intelligens-baserte verktøy som prediktive biomarkører for presisjons-immunterapi i lungekreft.
  • Samarbeidspartner (affiliate) med Brigham and Women’s Hospital, Dana Farber Cancer Institute, Harvard Medical School, Boston, USA.
  • Samarbeidspartner med Imperial College London, UK.

  • Falah Jabar Rahim, Lill-Tove Rasmussen Busund, Biagio Ricciuti, Masoud Tafavvoghi, Thomas Karsten Kilvær, David J. Pinato m.fl.:
    Fully Automatic Content-Aware Tiling Pipeline for Pathology Whole Slide Images
    Intelligence-Based Medicine 01. november 2025 DOI
  • Amin H. Nassar, Chul Kim, Tolulope Adeyelu, Elias Bou Farhat, Hassan Abushukair, Mehrdad Rakaee m.fl.:
    Integrated molecular and clinical characterization of pulmonary large cell neuroendocrine carcinoma
    Nature Communications 19. august 2025 DOI
  • Dagny Førde, Thomas Karsten Kilvær, Mona Irene Pedersen, Ana Paola Lombardi, Irene D’arsiè, Erna-Elise Paulsen m.fl.:
    Prognostic impact of miR-17-5p and miR-20a-5p in NSCLC diverge in subgroups according to lymph node status
    Frontiers in Oncology 25. september 2025 DOI
  • Bernhard Scheiner, Pasquale Lombardi, Antonio D’Alessio, Gwangil Kim, Masoud Tafavvoghi, Oleksandr Petrenko m.fl.:
    Preliminary qualification of a machine learning-based assessment of the tumor immune infiltrate as a predictor of outcome in patients with hepatocellular carcinoma treated with atezolizumab plus bevacizumab
    Journal for ImmunoTherapy of Cancer (JITC) 05. oktober 2025 DOI
  • Dagny Førde, Thomas Karsten Kilvær, Mona Irene Pedersen, Egil Støre Blix, Ilona Halva Urbarova, Erna-Elise Paulsen m.fl.:
    High density of TCF1+ stem-like tumor-infiltrating lymphocytes is associated with favorable disease-specific survival in NSCLC
    Frontiers in Immunology 2024 DOI / ARKIV
  • Mehrdad Rakaee, Masoud Tafavvoghi, Biagio Ricciuti, Joao V Alessi, Alessio Cortellini, Fabrizio Citarella m.fl.:
    Deep Learning Model for Predicting Immunotherapy Response in Advanced Non-Small Cell Lung Cancer
    JAMA Oncology 2024 DOI / ARKIV
  • Masoud Tafavvoghi, Anders Sildnes, Mehrdad Rakaee, Nikita Shvetsov, Lars Ailo Aslaksen Bongo, Lill-Tove Rasmussen Busund m.fl.:
    Deep learning-based classification of breast cancer molecular subtypes from H&E whole-slide images
    Journal of Pathology Informatics 2024 DOI / ARKIV
  • Csaba Kerepesi, Hassan Mohammed Abushukair, Biagio Ricciuti, Amin H Nassar, Elio Adib, Joao V Alessi m.fl.:
    Association of Baseline Tumor-Specific Neoantigens and CD8+ T-Cell Infiltration With Immune-Related Adverse Events Secondary to Immune Checkpoint Inhibitors
    JCO Precision Oncology (JCO PO) 2024 DOI
  • Erna-Elise Paulsen, Sigve Andersen, Mehrdad Rakaee, Mona Irene Pedersen, Ana Paola Lombardi, Mette Pøhl m.fl.:
    Impact of microvessel patterns and immune status in NSCLC: a non-angiogenic vasculature is an independent negative prognostic factor in lung adenocarcinoma
    Frontiers in Oncology 2023 DOI / ARKIV
  • Lorenzo Nibid, Carlo Greco, Ermanno Cordelli, Giovanna Sabarese, Michele Fiore, Charles Z. Liu m.fl.:
    Deep pathomics: A new image-based tool for predicting response to treatment in stage III non-small cell lung cancer
    PLOS ONE 2023 DOI
  • Mehrdad Rakaee, Sigve Andersen, K. Giannikou, Erna-Elise Paulsen, Thomas Karsten Kilvær, Lill-Tove Rasmussen Busund m.fl.:
    Machine learning-based immune phenotypes correlate with STK11/KEAP1 co-mutations and prognosis in resectable NSCLC: a sub-study of the TNM-I trial
    Annals of Oncology 2023 DOI / ARKIV
  • Biagio Ricciuti, Arielle Elkrief, Joao Alessi, Xinan Wang, Yvonne Li, Hersh Gupta m.fl.:
    Clinicopathologic, Genomic, and Immunophenotypic Landscape of ATM Mutations in Non–Small Cell Lung Cancer
    Clinical Cancer Research 2023 DOI
  • Donjeta Gjuka, Elio Adib, Kendra Garrison, Jianfeng Chen, Yuxue Zhang, Wenjiao Li m.fl.:
    Enzyme-mediated depletion of methylthioadenosine restores T cell function in MTAP-deficient tumors and reverses immunotherapy resistance
    Cancer Cell 28. september 2023 DOI
  • Masoud Tafavvoghi, Erna-Elise Paulsen, Falah Jabar Rahim, Sigve Andersen, Ana Paola Lombardi, Elin Richardsen m.fl.:
    51P Deep learning-based detection of non-angiogenic growth patterns in early-stage lung cancer
    ESMO Real World Data and Digital Oncology 01. november 2025 DOI
  • Falah Jabar Rahim, P-C. Lee, C. Yoo, H.J. Chon, J. Cheon, M. Kudo m.fl.:
    206P Development of a machine-learning model on pre-treatment characteristics to predict long-term survivorship to atezolizumab plus bevacizumab in advanced hepatocellular carcinoma
    ESMO Real World Data and Digital Oncology 01. november 2025 DOI
  • Per Niklas Benzler Waaler, Magdalena Solveig Robertsen, Erna-Elise Paulsen, Sigve Andersen, Elin Richardsen, Åslaug Helland m.fl.:
    21P Integration of genomic and clinical data for relapse prediction in early-stage non-small cell lung cancer
    ESMO Real World Data and Digital Oncology 01. november 2025 DOI
  • Masoud Tafavvoghi, Falah Jabar Rahim, Sigve Andersen, Erna-Elise Paulsen, A. Cortellini, P. Lombardi m.fl.:
    219P Benchmarking state-of-the-art deep learning models for tumor-infiltrating lymphocytes (TILs) quantification
    ESMO Real World Data and Digital Oncology 01. november 2025 DOI
  • Mehrdad Rakaee, Per Niklas Benzler Waaler, Falah Jabar Rahim, Krinio Giannikou, Elio Adib, Sigve Andersen m.fl.:
    Abstract 5366: DRAGEN pipeline validation for somatic variant detection in diagnostics using TSO500 panel
    Cancer Research 21. april 2025 DOI
  • Elias Bou Farhat, Amin Nassar, Hassan Mohammed Abushukair, Michel Alchoueiry, Samer Salem, Marc Machaalani m.fl.:
    Molecular and clinical insights of trastuzumab deruxtecan efficacy in advanced breast cancer (aBC).
    Journal of Clinical Oncology 01. juni 2025 DOI
  • Masoud Tafavvoghi, Elio Adib, Elias Bou Farhat, Falah Jabar Rahim, Amin Nassar, Åslaug Helland m.fl.:
    Single-slide histology-based deep learning model for mismatch repair deficiency prediction in colorectal cancer.
    Journal of Clinical Oncology 01. juni 2025 DOI
  • Mehrdad Rakaee, Solfrid Thunold, Masoud Tafavvoghi, Åsa Kristina Öjlert, Krinio Giannikou, Elio Adib m.fl.:
    Multiomics profiling for prediction of immunotherapy response in advanced pleural mesothelioma: Sub-study of the NIPU trial.
    Journal of Clinical Oncology 01. juni 2025 DOI
  • Solfrid Thunold, Mehrdad Rakaee, K. Giannikou, Eivor Hernes, Saima Jamil Farooqi, Å.K. Öjlert m.fl.:
    2977P Dual-time-point [18F] FDG PET/CT and tumour microenvironment features in pleural mesothelioma patients receiving immunotherapy
    Annals of Oncology 01. september 2025 DOI
  • Mehrdad Rakaee :
    Pathology Foundation Models for Molecular and IO prediction
    30. oktober 2025 DOI
  • Mehrdad Rakaee :
    AI In Computational Pathology for Predicting Immunotherapy Outcomes
    18. juli 2025 DOI
  • Mehrdad Rakaee :
    Revealing immune response and resistance through spatial profiling of NSCLC microenvironment
    03. september 2025
  • Mehrdad Rakaee :
    Deep learning model for predicting immunotherapy response in patients with advanced NSCLC
    01. juni 2025 DOI
  • Mehrdad Rakaee :
    Lovende biomarkør for immunterapi ved pleuramesoteliom
    02. juni 2025
  • Mehrdad Rakaee :
    Maskinlæring kan avgjøre når tester spriker om tarmkreftbehandling
    01. juni 2025
  • Mehrdad Rakaee :
    Priser til fremragende forskere ved Oslo universitetssykehus 2025 - Oslo universitetssykehus HF
    06. juni 2025
  • Mehrdad Rakaee :
    Priser til fremragende forskningsartikler publisert høsten 2024 - Oslo universitetssykehus HF
    28. mai 2025
  • Mehrdad Rakaee :
    AI Model Predicts Immunotherapy Response in Advanced Lung Cancer Patients | Managed Healthcare Executive
    08. januar 2025
  • M.S. Robertsen, Per Niklas Benzler Waaler, Sigve Andersen, Erna-Elise Paulsen, Thomas Karsten Kilvær, Sissel Gyrid Freim Wahl m.fl.:
    1802P Tissue tumor mutational burden and risk of recurrence in early-stage non-small cell lung cancer
    Annals of Oncology 01. september 2025 DOI
  • A.H. Nassar, E. Bou Farhat, N. Ghandi, E. Adib, Mehrdad Rakaee, K. Raghav m.fl.:
    PT2.14.05 Redefining Clinical Outcomes for Peritoneal Mesothelioma (PeM) in the Era of Immunotherapy
    Journal of Thoracic Oncology 01. oktober 2025 DOI
  • E. Gariazzo, A. Elkrief, K. Concannon, D. Ognissanti, A. Dodi, V. Favorito m.fl.:
    PT2.11.01 Predictors of Response to PD-(L)1 Blockade in Patients With Oncogene-Driver Negative NSCLC Without History of Tobacco Use
    Journal of Thoracic Oncology 01. oktober 2025 DOI
  • Mehrdad Rakaee, Masoud Tafavvoghi, A. Cortellini, Sigve Andersen, Falah Jabar Rahim, L. Brunetti m.fl.:
    P1.11.62 Deep Learning Histopathology Model for PD-L1 (TPS) and Immunotherapy Outcome Prediction in Non-Small Cell Lung Cancer
    Journal of Thoracic Oncology 01. oktober 2025 DOI
  • Elio Adib, falah jabar, Masoud Tafavvoghi, Amin Nassar, Elias Bou Farhat, Harvey J. Mamon m.fl.:
    Deep learning–powered analysis of tumor-infiltrating lymphocytes (TILs) in colorectal cancer
    Journal of Clinical Oncology 01. februar 2025 DOI
  • Mehrdad Rakaee :
    Existing biomarkers predicting ICI treatment response in advanced NSCLC - OncoDaily
    29. desember 2024
  • Mehrdad Rakaee :
    Young Researcher of 2024 at Onkologisk Forum
    21. november 2024
  • Mehrdad Rakaee :
    Immune Infiltration in the Tumor Microenvironment May Affect the Efficacy of Immunotherapy
    21. november 2024
  • Mehrdad Rakaee :
    Tumormikromiljø og effekt av immunterapi
    21. november 2024 DOI
  • Elio Adib, falah jabar, Masoud Tafavvoghi, Amin Nassar, Lill-Tove Rasmussen Busund, Tom Dønnem m.fl.:
    Artificial Intelligence-powered analysis of the tumor immune microenvironment in primary and metastatic colorectal cancer
    Annals of Oncology 01. september 2024 DOI
  • Falah Jabar Rahim, Sigve Andersen, Erna-Elise Paulsen, Masoud Tafavvoghi, Elin Helmine Richardsen, Sissel Gyrid Freim Wahl m.fl.:
    Integrating Artificial intelligence (AI)-based lymphocytic infiltration assessment in early-stage NSCLC: A sub-study of the TNM-I trial
    Annals of Oncology 01. september 2024 DOI
  • Mehrdad Rakaee :
    Machine learning and AI in pathology for prediction of response to immunotherapy
    2024
  • Elio Adib, Mehrdad Rakaee, Amin Nassar, Elias Bou Farhat, Stephen Hodi, David J. Kwiatkowski :
    Machine learning (ML)-based quantification of tumor-infiltrating lymphocytes (TIL) and clinical outcomes of patients with melanoma treated with immune-checkpoint inhibitors (ICI)
    Journal of Clinical Oncology 01. juni 2023 DOI
  • Mehrdad Rakaee :
    Stian har livstruende lungekreft: – Jeg er beviset på at forskning nytter
    08. juni 2023
  • Mehrdad Rakaee, Masoud Tafavvoghi, Elio Adib, Biagio Ricciuti, Joao Alessi, Alessio Cortellini m.fl.:
    Artificial intelligence algorithm developed to predict immune checkpoint inhibitors efficacy in non–small-cell lung cancer
    Journal of Clinical Oncology 01. juni 2023 DOI
  • Scheiner Bernhard, Alessio Antonio, Kim Gwangil, D. Goldin Robert, A.M. Fulgenzi Claudia, Balcar Lorenz m.fl.:
    MACHINE LEARNING-BASED ASSESSMENT OF TUMOUR- INFILTRATING LYMPHOCYTES PREDICTS OUTCOMES IN PATIENTS WITH HEPATOCELLULAR CARCINOMA UNDERGOING ATEZOLIZUMAB AND BEVACIZUMAB TREATMENT
    2023
  • Mehrdad Rakaee, Patrick Holmstad :
    Mutational drivers of a dysfunctional local immune response in resected non-small cell lung cancer (NSCLC) patients
    UiT Norges arktiske universitet 30. mai 2023
  • Mehrdad Rakaee, Siri Kristoffersen :
    Developing a machine learning model for tumor cell quantification in standard histology images of lung cancer
    UiT Norges arktiske universitet 31. mai 2023
  • Mehrdad Rakaee, Elio Adib, Biagio Ricciuti, Lynette M. Sholl, Weiwei Shi, Joao V Alessi m.fl.:
    Computational pathology by Artificial Intelligence (AI) on quantifying the lymphocytic infiltration predicts the immunotherapy response in NSCLC
    2022

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    Forskningsinteresser

    • Kunstig Intelligens (AI) i digital patologi
    • Kreftimmunterapi
    • Persontilpasset onkologi




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