Publications
2024
Svenning, J.B.*, Vaskog, T., Campbell, K., Bæverud, A.H., Myhre, T.N., Dalheim, L., Forgereau, Z.L., Osanen, J.E., Hansen, E.H., Bernstein, H.C. (2024). Lipidome plasticity enables unusual photosynthetic flexibility in Arctic vs. temperate diatoms. Marine Drugs. https://doi.org/10.3390/md22020067
2023
Chan, D.T.C., Baldwin, G.S., Bernstein, H.C.* (2023). Revealing the host-dependent nature of an engineered genetic inverter in concordance with physiology. BioDesign Research. https://doi.org/10.34133/bdr.0016
Aalto, N.J., Schweizer, H., Grann-Meyer, E., Krsmanovic, S., Svenning, J.B., Dalheim, L., Petters, S., Ingebrigtsen, R., Hulatt, C.J., and Bernstein, H.C.* (2023). Microbial community dynamics during a harmful Chrysochromulina leadbeateri bloom. Applied and Environmental Microbiology. https://doi.org/10.1128/aem.01895-22
Moran, J.J.*, Bernstein, H.C., Mobberley, J.M., Thompson, A.M., Kim, Y.M., Dana, K.L., Cory, A.B., Courtney, S., Renslow, R.S., Fredrickson, J.K., Kreuzer, H.W., and Lipton, M.S. (2023). Daylight-driven carbon exchange through a vertically structured microbial community. Frontiers in Microbiology. https://doi.org/10.3389/fmicb.2023.1139213
Sert, M.F.*, de Grot, T.R., Kekäläinen, T., Jänis, J., Schweitzer, H., Bernstein, H.C., Ferré, B., Gründger, F., Niemann, H. (2023). Elevated methane alters dissolved organic matter composition in the Arctic Ocean cold seeps. Frontiers in Earth Science. https://doi.org/10.3389/feart.2023.1290882
2022
Aalto, N. J., Schweitzer, H.D., Krsmanovic, S., Campbell, K.C., Bernstein, H. C.* (2022). Diversity and selection of surface marine microbiomes in the Atlantic-influenced Arctic. Frontiers in Microbiology. https://doi.org/10.3389/fmicb.2022.892634
Phalak, P., Bernstein, H. C., Lindemann, S.R., Renslow, R.S., Thomas, D.G., Henson, M.A., Song, H-S.* (2022). Spatiotemporal metabolic network models reveal complex autotroph-heterotroph biofilm interactions governed by photon incidences. IFAC-PapersOnLine. https://doi.org/10.1016/j.ifacol.2022.07.430
Lima, S., Lokesh, J., Schulze, P.S.C., Wijffels, R.H., Viswanath, K., Scargiali, F., Petters, S., Bernstein, H.C., Morales-Sanchez, D.,* (2022). Flashing lights affect the photophysiology and expression of carotenoid and lipid synthesis genes in Nannochloropsis gaditana. Journal of Biorechnology. https://doi.org/10.1016/j.jbiotec.2022.11.012
Beck, A.E., Pintar, K., Schepens, D., Schrammeck, A., Johnson, T., Bleem, A., Du, M., Harcombe, W.R., Bernstein, H. C., Heys, J.J., Gedeon, T., Carlson, R.P.* (2022). Environment constrains fitness advantages of division of labor in microbial consortia engineered for metabolite push or pull interactions. bioRxiv pre-print. https://doi.org/10.1101/2022.01.19.477024
2021
Aalto, N. J., Campbell, K., Eilertsen, H. C., Bernstein, H. C.* (2021). Drivers of Atmosphere-Ocean CO2 Flux in Northern Norwegian Fjords. Frontiers in Marine Science. https://doi.org/10.3389/fmars.2021.692093
Schweitzer, H.D., Aalto, N.J., Busch, W., Chan, D.T.C., Chiesa, M., Elvevoll, E.O., Gerlach, R., Krause, K., Mocaer, K., Moran, J.J., Noel, J.P., Patil, S.K., Schwab, Y., Wijffels, R.H., Wulff, A., Øvreås, L., Bernstein, H.C.* (2021) Innovating carbon capture biotechnologies through ecosystem inspired solutions. One Earth. https://doi.org/10.1016/j.oneear.2020.12.006
Dalheim, L.*, Svenning, J.B., Olsen, R.L. (2021) In vitro intestinal digestion of lipids from the marine diatom Porosira glacialis compared to commercial LC n-3 PUFA products. Plos one. https://doi.org/10.1371/journal.pone.0252125
Dalheim, L.*, Svenning, J.B., Eilertsen, H.C., Vasskog, T. and Olsen, R.L. (2021). Stability of lipids during wet storage of the marine diatom Porosira glacialis under semi-preserved conditions at 4 and 20 C. Journal of Applied Phycology. https://doi.org/10.1007/s10811-020-02292-0
Osvik, R. D.*, Andersen, J.H., Eilertsen, H.C., Geneviere, A.-M., Hansen, E. H. (2021). Bioactivity of a Marine Diatom (Porosira glacialis [Grunow] Jörgensen 1905) Cultivated With and Without Factory Smoke CO2. Industrial Biotechnology. http://doi.org/10.1089/ind.2020.0031
Osvik, R. D.*, Ingebrigtsen, R.A., Norrbin, M.F., Andersen, J.H., Eilertsen, H.C., Hansen, E.H. (2021). Adding Zooplankton to the OSMAC Toolkit: Effect of Grazing Stress on the Metabolic Profile and Bioactivity of a Diatom. Marine Drugs. https://doi.org/10.3390/md19020087
2020
Morales-Sánchez, D.*, Schulze, P.S., Kiron, V. and Wijffels, R.H. 2020. Temperature-dependent lipid accumulation in the polar marine microalga Chlamydomonas malina RCC2488. Frontiers in plant science. https://doi.org/10.3389/fpls.2020.619064
Svenning, J.B.*, Dalheim, L., Vasskog, T., Matricon, L., Vang, B., Olsen, R. L . Lipid yield from the diatom Porosira glacialis is determined by solvent choice and number of extractions, independent of cell disruption. (2020) Scientific reports. https://doi.org/10.1038/s41598-020-79269-z
Khan, N., Yeung, E., Farris, Y., Fansler, S. J., & Bernstein, H. C.* (2020). A broad-host-range event detector: expanding and quantifying performance between Escherichia coli and Pseudomonas species. Synthetic Biology. https://doi.org/10.1093/synbio/ysaa002
Kessell, A.K., McCullough, H.C., Auchtung, J.M., Bernstein, H.C., Song, H-S.* (2020). Predictive interactome modelling for precision microbiome engineering. Current Opinion in Chemical Engineering. https://doi.org/10.1016/j.coche.2020.08.003
Zupanic, A., Bernstein, H. C., & Heiland, I. (2020). Systems biology: current status and challenges. Cellular and Molecular Life Sciences. https://doi.org/10.1007/s00018-019-03410-z
Lee, J-Y, Haruta, S., Kato, S., Bernstein, H.C., Lindemann, S.R., Lee, D-Y., Fredrickson, J.K., & Song, H-S.* (2020). Prediction of Neighbor-dependent Microbial Interactions from Limited Population Data. Frontiers in Microbiology. https://doi.org/10.3389/fmicb.2019.03049
2019
Bernstein, H.C.* (2019). Reconciling engineering and ecological design principles for building microbiomes. mSystems. https://doi.org/10.1128/mSystems.00106-19
Svenning, J. B.*, Dalheim, L., Eilertsen, H. C., & Vasskog, T. (2019). Temperature dependent growth rate, lipid content and fatty acid composition of the marine cold-water diatom Porosira glacialis. Algal research. https://doi.org/10.1016/j.algal.2018.10.009
Zengler, K., Hofmockel, K., Baliga, N.S., Behie, S.W., Bernstein, H.C., Brown, J.B., Dinney, J.R., Folge, S.A., Forry, S.P., Hess, M., Jackson, S.A., Jansson, C., Lindemann, S.R., Pett-Ridge, J., Maranas, C., Venturelli, O.S., Wallenstein, M.D., Shank, E.A., Northen, T.R.* (2019) EcoFABS: advancing microbiome science through standardized fabricated ecosystems. Nature Methods. https://doi.org/10.1038/s41592-019-0465-0
Zegeye, E.K., Brislawn, J.C., Farris, Y., Fansler, S.J., Hofmockel, K.S., Jansson, J.K., Wright, A.T., Graham, E.B., Naylor, D., McClure, R.S.*, Bernstein, H.C.* (2019). Selection, succession and stabilization of soil microbial consortia. mSystems. https://doi.org/10.1128/mSystems.00055-19
Song, H-S.*, Lee, J-Y, Haruta, S., Nelson, W.C., Lee, D-Y., Lindemann, S.R., Fredrickson, J.K., Bernstein, H.C. (2019). Minimal Interspecies Interaction Adjustment (MIIA): inference of member-dependent interactions in microbiomes. Frontiers in Microbiology. https://doi.org/10.3389/fmicb.2019.01264
Brislawn, J.C., Graham, E.B., Dana, K., Ihardt, P., Fansler, S.J., Chrisler, W.B., Cliff, J.B., Stegen, J.C., Moran, J.J.*, Bernstein, H.C.* (2019). Forfeiting the priority effect: turnover defines biofilm community succession. The ISME Journal. https://doi.org/10.1038/s41396-019-0396-x
Linn, V.S., Volk, R.F., DeLeon, A.J., Anderson, L.N., Purvine, S.O., Shukla, A.K., Bernstein, H.C., Smith, J.N., Wright, A.T.* (2019). Structure dependent determination of organophosphate targets in mammalian tissues using activity-based protein profiling. Chemical Research in Toxicology. https://doi.org/10.1021/acs.chemrestox.9b00344
